Wim Pomp
1fe3b3c824
- Make bioformats optional because jpype can cause problems
...
- Ruff format
2025-08-06 11:03:03 +02:00
Wim Pomp
8b280b3061
- make cache size configurable
2025-01-08 13:18:38 +01:00
Wim Pomp
af600633cf
- main: not parallel anymore (for now), make batch processing easier.
2024-09-11 14:23:41 +02:00
Wim Pomp
be2c519951
- transforms bugfix: swap xy
...
- save as movie: progress bar
- swap command line argument out for --write
2024-07-11 10:13:19 +02:00
Wim Pomp
1d2cc951fa
- save as mp4 or mkv movie
2024-06-04 19:11:40 +02:00
Wim Pomp
c13ae9d4ad
- Make Imread __init__ signature more compatible with typing.
...
- Support czi metadata version 1.1.
2024-04-24 17:11:58 +02:00
Wim Pomp
db4bd63b94
- OmeCache: detect changes in ome.xml
2024-04-10 15:20:12 +02:00
Wim Pomp
a6457ea497
- Slicing bugfix.
2023-11-21 16:08:57 +01:00
Wim Pomp
5a34adef7b
- Slicing bugfix.
...
- Sort imports.
- Make sitk-elastix optional again.
2023-11-20 14:47:47 +01:00
Wim Pomp
ef6116c6bc
- some ome fixes
2023-08-21 11:14:32 +02:00
Wim Pomp
ff6c1aa8a8
- base & view model for imread
...
- transforms bugfix
- implement (nan)var and (nan)std
- add tests
2023-08-18 18:10:42 +02:00
Wim Pomp
8a74698fa5
- seqread bugfix where dimensions were mixed up
...
- seqread load metadata in parallel in
2023-07-04 16:24:17 +02:00
Wim Pomp
f40f7e501b
- readme changes
2023-06-29 14:34:54 +02:00
Wim Pomp
506b449f4d
- read metadata into ome structure
...
- pytest
- use pathlib
- series as part of the path: path/PosN
- summary only shows some available metadata
- allow dict in Imread[dict(c=c, z=z, t=t)]
- bfread in different process so the user can start another jvm
- deal with multiple images (series/positions) in czi files
- use jpype instead of javabridge/bioformats
- poetry for install
2023-06-29 14:23:03 +02:00
Wim Pomp
7c35741450
- First commit
2022-07-15 14:18:43 +02:00
