- Make bioformats optional because jpype can cause problems

- Ruff format
This commit is contained in:
Wim Pomp
2025-08-06 11:03:03 +02:00
parent 3346ed3a48
commit 1fe3b3c824
17 changed files with 1223 additions and 794 deletions

View File

@@ -13,17 +13,19 @@ Currently, it supports imagej tif files, czi files, micromanager tif sequences a
## Installation
One of:
```
pip install ndbioimage
```
### Installation with option to write mp4 or mkv:
Work in progress! Make sure ffmpeg is installed.
```
pip install ndbioimage[bioformats]
pip install ndbioimage[write]
pip install ndbioimage[bioformats, write]
```
- bioformats: use [bio-formats](https://www.openmicroscopy.org/bio-formats/)
as fallback when other readers cannot open a file.
- write: write an image file into a mp4 or mkv file. Work in progress! Make sure ffmpeg is installed.
## Usage
### Python