55 lines
1.4 KiB
TOML
55 lines
1.4 KiB
TOML
[tool.poetry]
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name = "ndbioimage"
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version = "2024.10.0"
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description = "Bio image reading, metadata and some affine registration."
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authors = ["W. Pomp <w.pomp@nki.nl>"]
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license = "GPLv3"
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readme = "README.md"
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keywords = ["bioformats", "imread", "numpy", "metadata"]
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include = ["transform.txt"]
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repository = "https://github.com/wimpomp/ndbioimage"
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exclude = ["ndbioimage/jars"]
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[tool.poetry.dependencies]
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python = "^3.10"
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numpy = ">=1.20.0"
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pandas = "*"
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tifffile = "*"
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czifile = "2019.7.2"
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tiffwrite = ">=2025.1.0"
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ome-types = ">=0.4.0"
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pint = "*"
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tqdm = "*"
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lxml = "*"
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pyyaml = "*"
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parfor = ">=2024.9.2"
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JPype1 = "*"
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SimpleITK-SimpleElastix = [
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{ version = "*", python = "<3.12" },
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{ version = "*", python = ">=3.12", markers = "sys_platform != 'darwin'" },
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{ version = "*", python = ">=3.12", markers = "platform_machine == 'aarch64'" },
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]
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scikit-image = "*"
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imagecodecs = "*"
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xsdata = "^23" # until pydantic is up-to-date
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matplotlib = { version = "*", optional = true }
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scikit-video = { version = "*", optional = true }
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pytest = { version = "*", optional = true }
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[tool.poetry.extras]
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test = ["pytest"]
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write = ["matplotlib", "scikit-video"]
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[tool.poetry.scripts]
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ndbioimage = "ndbioimage:main"
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[tool.pytest.ini_options]
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filterwarnings = ["ignore:::(colorcet)"]
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[tool.isort]
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line_length = 119
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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