506b449f4d
- pytest - use pathlib - series as part of the path: path/PosN - summary only shows some available metadata - allow dict in Imread[dict(c=c, z=z, t=t)] - bfread in different process so the user can start another jvm - deal with multiple images (series/positions) in czi files - use jpype instead of javabridge/bioformats - poetry for install
38 lines
805 B
TOML
38 lines
805 B
TOML
[tool.poetry]
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name = "ndbioimage"
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version = "2023.6.0"
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description = "Bio image reading, metadata and some affine registration."
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authors = ["W. Pomp <w.pomp@nki.nl>"]
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license = "GPLv3"
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readme = "README.md"
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keywords = ["bioformats", "imread", "numpy", "metadata"]
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include = ["transform.txt"]
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repository = "https://github.com/wimpomp/ndbioimage"
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[tool.poetry.dependencies]
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python = "^3.8"
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numpy = "*"
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pandas = "*"
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tifffile = "*"
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czifile = "*"
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tiffwrite = "*"
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ome-types = "*"
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pint = "*"
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tqdm = "*"
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lxml = "*"
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pyyaml = "*"
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parfor = "*"
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JPype1 = "*"
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SimpleITK-SimpleElastix = "*"
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pytest = { version = "*", optional = true }
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[tool.poetry.extras]
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test = ["pytest-xdist"]
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[tool.poetry.scripts]
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ndbioimage = "ndbioimage:main"
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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