33ddb845ae
- Make a list of attributes not to copy --> faster slicing. - isclosed attribute. - disable __del__ for now because it doesn't play nice with multiprocessing
49 lines
1.7 KiB
Python
49 lines
1.7 KiB
Python
import setuptools
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import platform
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import os
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version = '2022.7.1'
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if platform.system().lower() == 'linux':
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import pkg_resources
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pkg_resources.require(['pip >= 20.3'])
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with open('README.md', 'r') as fh:
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long_description = fh.read()
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with open(os.path.join(os.path.dirname(__file__), 'ndbioimage', '_version.py'), 'w') as f:
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f.write(f"__version__ = '{version}'\n")
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try:
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with open(os.path.join(os.path.dirname(__file__), '.git', 'refs', 'heads', 'master')) as h:
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f.write("__git_commit_hash__ = '{}'\n".format(h.read().rstrip('\n')))
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except Exception:
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f.write(f"__git_commit_hash__ = 'unknown'\n")
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setuptools.setup(
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name='ndbioimage',
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version=version,
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author='Wim Pomp',
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author_email='w.pomp@nki.nl',
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description='Bio image reading, metadata and some affine registration.',
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long_description=long_description,
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long_description_content_type='text/markdown',
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url='https://github.com/wimpomp/ndbioimage',
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packages=['ndbioimage', 'ndbioimage.readers'],
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classifiers=[
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'Programming Language :: Python :: 3',
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'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
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'Operating System :: OS Independent',
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],
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python_requires='>=3.7',
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install_requires=['untangle', 'pandas', 'psutil', 'numpy', 'tqdm', 'tifffile', 'czifile', 'pyyaml', 'dill',
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'tiffwrite'],
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extras_require={'transforms': 'SimpleITK-SimpleElastix',
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'bioformats': ['python-javabridge', 'python-bioformats']},
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tests_require=['pytest-xdist'],
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entry_points={'console_scripts': ['ndbioimage=ndbioimage.ndbioimage:main']},
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package_data={'': ['transform.txt']},
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include_package_data=True,
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)
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