w.pomp
ff7cd562af
- implement more readers - fix downloading of bioformats jar - (mostly) compatible with python version
85 lines
3.2 KiB
TOML
85 lines
3.2 KiB
TOML
[package]
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name = "ndbioimage"
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version = "0.2.0"
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edition = "2024"
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rust-version = "1.94.0"
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authors = ["Wim Pomp <w.pomp@nki.nl>", "opencode"]
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license = "MIT OR Apache-2.0"
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description = "Read bio image formats using the bio-formats java package."
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homepage = "https://git.pomppervova.nl/wim/ndbioimage/src/branch/rs"
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repository = "https://git.pomppervova.nl/wim/ndbioimage/src/branch/rs"
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documentation = "https://docs.rs/ndbioimage"
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readme = "README.md"
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keywords = ["bioformats", "imread", "ndarray", "metadata"]
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categories = ["multimedia::images", "science"]
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exclude = ["/tests"]
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[lib]
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name = "ndbioimage"
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crate-type = ["cdylib", "rlib"]
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[dependencies]
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clap = { version = "4", features = ["derive"] }
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color-eyre = { version = "0.6", optional = true }
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console = { version = "0.16", optional = true }
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downloader = { version = "0.2", optional = true }
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ffmpeg-sidecar = { version = "2", optional = true }
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itertools = "0.15"
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indexmap = { version = "2", features = ["serde"] }
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indicatif = { version = "0.18", features = ["rayon"], optional = true }
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j4rs = { version = "0.25", optional = true }
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libczirw-sys = { path = "../libczirw-sys", optional = true }
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ndarray = { version = "0.17", features = ["serde"] }
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num = "0.4"
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numpy = { version = "0.29", optional = true }
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ome-metadata = { path = "../ome-metadata/ome-metadata" }
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ordered-float = { version = "5", optional = true }
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phf = { version = "0.14", features = ["macros"] }
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postcard = { version = "1", features = ["use-std"], optional = true }
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pyo3 = { version = "0.29", features = ["abi3-py310", "eyre", "anyhow", "generate-import-lib"], optional = true }
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pyo3-stub-gen = { version = "0.23", optional = true }
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rayon = { version = "1", optional = true }
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regex = "1"
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serde = { version = "1", features = ["rc", "derive"] }
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serde_yaml = { version = "0.9", optional = true }
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serde_with = "3"
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strum = { version = "0.28", features = ["derive"] }
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thiserror = "2"
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tiff = { version = "0.11", features = ["zstd"], optional = true }
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tiffwrite = { version = "2026.6.0", optional = true }
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tokio = { version = "1", features = ["rt", "rt-multi-thread"], optional = true }
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thread_local = { version = "1", optional = true }
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xmltree = { version = "0.12", optional = true }
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bioformats = { version = "0.1", optional = true }
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[dev-dependencies]
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rayon = "1"
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regex = "1"
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[build-dependencies]
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j4rs = "0.25"
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ffmpeg-sidecar = "2"
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retry = "2"
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toml = "1"
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[features]
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default = []
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all = ["bioformats_java", "bioformats_rust", "czi", "gpl-formats", "movie", "tiffseq", "tiffwrite", "tiff"]
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gpl-formats = []
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python = ["dep:pyo3", "dep:numpy", "dep:color-eyre", "dep:pyo3-stub-gen", "dep:postcard", "ome-metadata/python"]
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czi = ["dep:libczirw-sys", "dep:xmltree", "dep:thread_local"]
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bioformats_rust = ["dep:bioformats", "dep:thread_local"]
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bioformats_java = ["dep:j4rs", "dep:thread_local", "dep:downloader"]
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tiffwrite = ["dep:tiffwrite", "dep:indicatif", "dep:console", "dep:rayon"]
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tiffseq = ["dep:tiff", "dep:serde_yaml"]
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tiff = ["dep:tiff", "dep:thread_local"]
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movie = ["dep:ffmpeg-sidecar", "dep:tokio", "dep:ordered-float", "dep:indicatif", "dep:console"]
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[package.metadata.docs.rs]
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features = ["bioformats", "gpl-formats", "czi", "tiff", "movie"]
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[profile.test]
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inherits = "release"
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[profile.dev.package.backtrace]
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opt-level = 3 |