w.pomp
5f70c4152b
- update workflows
2026-10-27 19:05:31 +01:00
w.pomp
02cfa39677
- pin zip dependency of bioformats
2026-10-27 19:01:15 +01:00
w.pomp
3c7af5da4d
- return Error, raise Exception when trying to use f128 data
...
- clean parsing of python types into rust types
- finish PyView.reshape
2026-10-27 18:23:37 +01:00
Wim Pomp
8a4c965477
- default value argument for interpolation
2026-10-25 10:23:57 +01:00
Wim Pomp
22e8ab1dd2
- some more macro use
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- implement reshape for python
- make Reader and View Sync
- register_translation_fft
- calculate_transforms_from and functions it needs
2026-10-24 11:58:06 +02:00
w.pomp
3e33fe18c1
- improve Imread slicing
...
- can_open function for Reader trait
2026-10-22 19:50:20 +02:00
w.pomp
f0404d0419
- remove center and shape from Transform
2026-10-22 11:47:26 +02:00
w.pomp
e1caa1c0b0
- fix Imread.transpose
...
- implement with_transform
- implement 2d transforms in View.as_array_dyn
2026-10-21 20:08:42 +02:00
Wim Pomp
453237cae9
- testing 2d transforms
2026-10-10 12:44:37 +02:00
Wim Pomp
4815690621
- read ome xml tiff
2026-10-03 23:08:23 +02:00
Wim Pomp
7f07f82fdb
- readme
2026-10-03 19:40:24 +02:00
Wim Pomp
e55152c55d
- use a fork of the tiff crate to open RGBPalette tiffs
2026-10-03 19:35:01 +02:00
Wim Pomp
aef3a2d502
Patch tiff crate to use fork with PhotometricInterpretation fix
2026-10-03 15:06:09 +02:00
Wim Pomp
41aa841b14
- add numpy flags
...
- all python objects pickleble
- transforms in python submodule
- fix tiffreader pxsize
- expose more of transforms to python
- loading transforms from yaml
2026-09-30 20:48:42 +02:00
w.pomp
6041cda475
- more transforms
2026-09-15 16:13:51 +02:00
w.pomp
4074770fd3
- inital transforms code
2026-09-04 15:51:53 +02:00
w.pomp
6913e65420
- gitignore
2026-08-07 17:01:32 +02:00
w.pomp
5ad9a44ecd
- add doc strings
2026-08-07 17:00:28 +02:00
w.pomp
b950f4a39d
- silence java warnings
...
- renam View -> Imread in Python
2026-08-07 15:26:12 +02:00
w.pomp
a0d2359e55
- various fixes
2026-08-07 15:14:16 +02:00
w.pomp
e4de76f26c
- as_array_dyn lru caching
2026-08-04 18:29:56 +02:00
w.pomp
9f5f9debc5
- frame caching
2026-08-04 14:35:24 +02:00
w.pomp
c975b1943f
- add __len__ and axes to PyShape stub
2026-07-24 10:29:15 +02:00
w.pomp
c16e71bf30
- add __len__ to PyShape
2026-07-22 17:31:36 +02:00
w.pomp
b063a63869
- fixing PyShape
2026-07-22 16:59:04 +02:00
w.pomp
1471ec00af
- fixing PyShape
2026-07-22 16:13:54 +02:00
w.pomp
0ed70edd3e
- small updates
2026-07-22 15:43:12 +02:00
w.pomp
a5ec4125f9
- small cosmetic changes
2026-07-22 13:40:27 +02:00
w.pomp
0d347b7967
- suppress most java warnings
2026-07-14 12:49:16 +02:00
w.pomp
25d2070ac3
- better python errors
2026-07-13 17:53:52 +02:00
w.pomp
916d301f1b
- open tiff seq folders with bioformats_java by finding the first tiff recursively
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- make PyView serializable by skipping the ome field
- fix python tests
2026-07-13 15:16:10 +02:00
w.pomp
0ce1187a43
- metadata
2026-07-13 13:41:02 +02:00
w.pomp
ff7cd562af
- implement shape in Rust
...
- implement more readers
- fix downloading of bioformats jar
- (mostly) compatible with python version
2026-07-13 13:40:34 +02:00
w.pomp
705ca16379
start using semver, fix doc.rs issue
2026-02-23 19:54:58 +01:00
Wim Pomp
d2c725440c
- bump ome-metadata dependency
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- add extract-ome cli subcommand
2026-01-04 17:03:14 +01:00
Wim Pomp
b1f8dd998b
- test ome reading from some example files
2026-01-04 15:13:35 +01:00
Wim Pomp
8db873c425
- bump ome-metadata dependency
...
- make Reader::new error instead of panic if file cannot be read
2026-01-04 15:09:23 +01:00
Wim Pomp
3c14168878
- implement custom error types
...
- less restrictive dependency versions
- some extra features and bugfixes for movie writing
- make python tests work again
2026-01-04 13:59:57 +01:00
Wim Pomp
3dc8e6af04
- bump bioformats to 8.3.0
...
- rust: command line binary, save as mp4, save as tiff, ome metadata, more methods for View, bugfixes, less unsafe code
- python: ome as dict
2025-08-21 19:45:02 +02:00
Wim Pomp
24af64ac7e
- make modules public
2025-04-27 20:14:57 +02:00
Wim Pomp
5195ccfcb5
- implement sliced views, including min, max, sum and mean operations
2025-04-27 20:07:49 +02:00
Wim Pomp
87e9715f97
- remove all readers but bioformats
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- open folder with sequence
2025-02-19 21:28:59 +01:00
Wim Pomp
2247a994be
- change to MIT license
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- thread local image reader instances
- add keywords and categories
- add python dependencies
- README
2025-02-17 19:53:34 +01:00
Wim Pomp
e5c6361086
Merge remote-tracking branch 'origin/rs' into rs
2025-02-16 23:03:55 +01:00
Wim Pomp
83ea9722f6
- some workarounds to get jars and shared libs in the right place for python
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- add most ndbioimage python code and use rs code as bfread
2025-02-16 23:03:48 +01:00
Wim Pomp
372b816f93
- some workarounds to get jars and shared libs in the right place for python
...
- add most ndbioimage python code and use rs code as bfread
2025-02-16 23:02:40 +01:00
Wim Pomp
fefdd6448b
- added ome_xml method
...
- some pyo3 methods
2025-02-08 20:22:45 +01:00
Wim Pomp
a3dfc075a8
- do not try java things when building for docs.rs
2025-02-03 16:27:24 +01:00
Wim Pomp
15eae99272
- do not try java things when building for docs.rs
2025-02-03 16:22:49 +01:00
wimpomp
1a8c3f22e5
Delete Cargo.lock
2025-02-03 16:21:58 +01:00
w.pomp