From d0a33de80460d50f5134ca4699fbb674d12752c1 Mon Sep 17 00:00:00 2001
From: Wim Pomp <w.pomp@nki.nl>
Date: Thu, 12 May 2022 09:22:20 +0200
Subject: [PATCH] - Grayscale or composite

---
 setup.py              | 2 +-
 tiffwrite/__init__.py | 9 ++++++---
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/setup.py b/setup.py
index 49ccb2c..17b2997 100644
--- a/setup.py
+++ b/setup.py
@@ -5,7 +5,7 @@ with open('README.md', 'r') as fh:
 
 setuptools.setup(
     name='tiffwrite',
-    version='2022.5.2',
+    version='2022.5.3',
     author='Wim Pomp @ Lenstra lab NKI',
     author_email='w.pomp@nki.nl',
     description='Parallel tiff writer compatible with ImageJ.',
diff --git a/tiffwrite/__init__.py b/tiffwrite/__init__.py
index 3a948a1..8ce037b 100755
--- a/tiffwrite/__init__.py
+++ b/tiffwrite/__init__.py
@@ -440,7 +440,11 @@ class IJTiffFile:
         else:
             desc.extend((f'images={np.prod(self.shape)}', f'channels={self.shape[0]}', f'slices={self.shape[1]}',
                          f'frames={self.shape[2]}'))
-        desc.extend(('hyperstack=true', 'mode=composite', 'loop=false', 'unit=micron'))
+        if self.shape[0] == 1:
+            desc.append('mode=grayscale')
+        else:
+            desc.append('mode=composite')
+        desc.extend(('hyperstack=true', 'loop=false', 'unit=micron'))
         if self.deltaz is not None:
             desc.append(f'spacing={self.deltaz}')
         if self.timeinterval is not None:
@@ -449,8 +453,7 @@ class IJTiffFile:
 
     @cached_property
     def empty_frame(self):
-        ifd = self.ifds[list(self.ifds.keys())[-1]].copy()
-        return self.compress_frame(np.zeros((ifd[257].value[0], ifd[256].value[0]), self.dtype))
+        return self.compress_frame(np.zeros(self.frame_shape, self.dtype))
 
     @cached_property
     def frame_shape(self):