code

src/lib.rs

@@ -0,0 +1,51 @@
+#![allow(non_camel_case_types)]
+pub mod ome;
+
+#[cfg(feature = "python")]
+mod py;
+
+use anyhow::{Error, Result};
+pub use ome::Ome;
+use quick_xml::de::from_str;
+use std::str::FromStr;
+
+impl FromStr for Ome {
+    type Err = Error;
+
+    fn from_str(s: &str) -> Result<Self> {
+        Ok(from_str(s)?)
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::fs::read_to_string;
+
+    macro_rules! test_read {
+        ($($name:ident: $file:expr $(,)?)*) => {
+            $(
+                #[test]
+                fn $name() -> Result<()> {
+                    let file = read_to_string(format!("tests/{}.xml", $file))?;
+                    let _ome: Ome = file.parse()?;
+                    Ok(())
+                }
+            )*
+        };
+    }
+
+    test_read!(
+        a: "YTL1849A111_2023_05_04__14_46_19_cellnr_1_track"
+        b: "Experiment-2029"
+        c: "test"
+        d: "4-Pos_001_002"
+        e: "YTL1841B2-2-1_1hr_DMSO_galinduction_1"
+        f: "1xp53-01-AP1"
+        g: "YTL378_JF552"
+        h: "MK022_cE9_1-01-Airyscan Processing-01-Scene-2-P1"
+        i: "beads_2023_05_04__19_00_22"
+        j: "20230511-p53-4x-CMV-1min-4h-01-Airyscan Processing-01"
+        k: "YTL1849A131_2023_05_04__13_36_36"
+    );
+}