506b449f4d
- pytest - use pathlib - series as part of the path: path/PosN - summary only shows some available metadata - allow dict in Imread[dict(c=c, z=z, t=t)] - bfread in different process so the user can start another jvm - deal with multiple images (series/positions) in czi files - use jpype instead of javabridge/bioformats - poetry for install
11 lines
314 B
Python
11 lines
314 B
Python
import pytest
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from pathlib import Path
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from ndbioimage import Imread
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@pytest.mark.parametrize("file",
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[file for file in (Path(__file__).parent / 'files').iterdir() if file.suffix != '.pzl'])
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def test_open(file):
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with Imread(file) as im:
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print(im[dict(c=0, z=0, t=0)].mean())
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