[tool.poetry]
name = "ndbioimage"
version = "2025.1.1"
description = "Bio image reading, metadata and some affine registration."
authors = ["W. Pomp <w.pomp@nki.nl>"]
license = "GPLv3"
readme = "README.md"
keywords = ["bioformats", "imread", "numpy", "metadata"]
include = ["transform.txt"]
repository = "https://github.com/wimpomp/ndbioimage"
exclude = ["ndbioimage/jars"]

[tool.poetry.dependencies]
python = "^3.10"
numpy = ">=1.20.0"
pandas = "*"
tifffile = "*"
czifile = "2019.7.2"
tiffwrite = ">=2024.12.1"
ome-types = ">=0.4.0"
pint = "*"
tqdm = "*"
lxml = "*"
pyyaml = "*"
parfor = ">=2025.1.0"
JPype1 = "*"
SimpleITK-SimpleElastix = [
    { version = "*", python = "<3.12" },
    { version = "*", python = ">=3.12", markers = "sys_platform != 'darwin'" },
    { version = "*", python = ">=3.12", markers = "platform_machine == 'aarch64'" },
]
scikit-image = "*"
imagecodecs = "*"
xsdata = "^23"  # until pydantic is up-to-date
matplotlib = { version = "*", optional = true }
scikit-video = { version = "*", optional = true }
pytest = { version = "*", optional = true }

[tool.poetry.extras]
test = ["pytest"]
write = ["matplotlib", "scikit-video"]

[tool.poetry.scripts]
ndbioimage = "ndbioimage:main"

[tool.pytest.ini_options]
filterwarnings = ["ignore:::(colorcet)"]

[tool.isort]
line_length = 119

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"