8 Commits

Include renames

Author	SHA1	Message	Date
w.pomp	d9806244d3	- add test file	2026-07-27 14:20:32 +02:00
w.pomp	74b81da78c	- czi: read tirf angle ... - tiff: read spacing	2026-07-27 14:14:18 +02:00
Wim Pomp	1fe3b3c824	- Make bioformats optional because jpype can cause problems ... - Ruff format	2025-08-06 11:03:03 +02:00
Wim Pomp	41658bea79	- replace "" with '' ... - bugfix in seqread finding images with pattern 00-Pos_000_000 - cache ome metadata - detect faulty time delta data in czi files - read ome from path.ome.xml if this file exists - add extract-ome command line option	2024-04-02 18:23:28 +02:00
Wim Pomp	5a34adef7b	- Slicing bugfix. ... - Sort imports. - Make sitk-elastix optional again.	2023-11-20 14:47:47 +01:00
Wim Pomp	ff6c1aa8a8	- base & view model for imread ... - transforms bugfix - implement (nan)var and (nan)std - add tests	2023-08-18 18:10:42 +02:00
Wim Pomp	bdd7a5399c	- set dtype according to pixel type in file ... - cziread bugfix - add reader for broken files saved by Fiji - make ndread work for arrays with less dimensions than 5 - relative imports - remove some old functions - make bfread check if it can open the file	2023-08-14 17:01:03 +02:00
Wim Pomp	506b449f4d	- read metadata into ome structure ... - pytest - use pathlib - series as part of the path: path/PosN - summary only shows some available metadata - allow dict in Imread[dict(c=c, z=z, t=t)] - bfread in different process so the user can start another jvm - deal with multiple images (series/positions) in czi files - use jpype instead of javabridge/bioformats - poetry for install	2023-06-29 14:23:03 +02:00