wim/ndbioimage
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cbeca59989aa908622dac578665120dc670e927f
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4 Commits

Author SHA1 Message Date
Wim Pomp
5a34adef7b - Slicing bugfix. 
- Sort imports.
- Make sitk-elastix optional again.
 2023-11-20 14:47:47 +01:00
Wim Pomp
ff6c1aa8a8 - base & view model for imread 
- transforms bugfix
- implement (nan)var and (nan)std
- add tests
 2023-08-18 18:10:42 +02:00
Wim Pomp
bdd7a5399c - set dtype according to pixel type in file 
- cziread bugfix
- add reader for broken files saved by Fiji
- make ndread work for arrays with less dimensions than 5
- relative imports
- remove some old functions
- make bfread check if it can open the file
 2023-08-14 17:01:03 +02:00
Wim Pomp
506b449f4d - read metadata into ome structure 
- pytest
- use pathlib
- series as part of the path: path/PosN
- summary only shows some available metadata
- allow dict in Imread[dict(c=c, z=z, t=t)]
- bfread in different process so the user can start another jvm
- deal with multiple images (series/positions) in czi files
- use jpype instead of javabridge/bioformats
- poetry for install
 2023-06-29 14:23:03 +02:00