ndbioimage

wim/ndbioimage

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Commit Graph

Author	SHA1	Message	Date
Wim Pomp	ff6c1aa8a8	- base & view model for imread - transforms bugfix - implement (nan)var and (nan)std - add tests	2023-08-18 18:10:42 +02:00
Wim Pomp	bdd7a5399c	- set dtype according to pixel type in file - cziread bugfix - add reader for broken files saved by Fiji - make ndread work for arrays with less dimensions than 5 - relative imports - remove some old functions - make bfread check if it can open the file	2023-08-14 17:01:03 +02:00
Wim Pomp	506b449f4d	- read metadata into ome structure - pytest - use pathlib - series as part of the path: path/PosN - summary only shows some available metadata - allow dict in Imread[dict(c=c, z=z, t=t)] - bfread in different process so the user can start another jvm - deal with multiple images (series/positions) in czi files - use jpype instead of javabridge/bioformats - poetry for install	2023-06-29 14:23:03 +02:00

Author

SHA1

Message

Date

Wim Pomp

ff6c1aa8a8

- base & view model for imread

- transforms bugfix
- implement (nan)var and (nan)std
- add tests

2023-08-18 18:10:42 +02:00

Wim Pomp

bdd7a5399c

- set dtype according to pixel type in file

- cziread bugfix
- add reader for broken files saved by Fiji
- make ndread work for arrays with less dimensions than 5
- relative imports
- remove some old functions
- make bfread check if it can open the file

2023-08-14 17:01:03 +02:00

Wim Pomp

506b449f4d

- read metadata into ome structure

- pytest
- use pathlib
- series as part of the path: path/PosN
- summary only shows some available metadata
- allow dict in Imread[dict(c=c, z=z, t=t)]
- bfread in different process so the user can start another jvm
- deal with multiple images (series/positions) in czi files
- use jpype instead of javabridge/bioformats
- poetry for install

2023-06-29 14:23:03 +02:00

3 Commits