wim/ndbioimage
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776b5204c4ccebab427c0bae907d30319df8ff02
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6 Commits

Author SHA1 Message Date
Wim Pomp
1fe3b3c824 - Make bioformats optional because jpype can cause problems 
- Ruff format
 2025-08-06 11:03:03 +02:00
Wim Pomp
ef6116c6bc - some ome fixes 2023-08-21 11:14:32 +02:00
Wim Pomp
cf7f2b6e1e - remove list of views from base 
- fix frame_decorator in views
- use transforms and frame_decorators as cache keys
 2023-08-19 12:08:04 +02:00
Wim Pomp
0bd22d766a - fix seqread bug 2023-07-20 10:22:55 +02:00
Wim Pomp
dbe80c495b - do_copy class attribute to force copy of ome 
- more ome parts optional
- reading closed file raises an error
 2023-07-11 17:20:03 +02:00
Wim Pomp
506b449f4d - read metadata into ome structure 
- pytest
- use pathlib
- series as part of the path: path/PosN
- summary only shows some available metadata
- allow dict in Imread[dict(c=c, z=z, t=t)]
- bfread in different process so the user can start another jvm
- deal with multiple images (series/positions) in czi files
- use jpype instead of javabridge/bioformats
- poetry for install
 2023-06-29 14:23:03 +02:00