wim/ndbioimage
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1fe3b3c824255f0ae086d94d8c58d7eaa450517d
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55 Commits

Author SHA1 Message Date
Wim Pomp
dbe80c495b - do_copy class attribute to force copy of ome 
- more ome parts optional
- reading closed file raises an error
 2023-07-11 17:20:03 +02:00
Wim Pomp
b629f98727 - seqread: lazily read delta_t 
- calculate timeinterval more efficiently
- remove timeval field
- bugfix in retrieving laser wavelenghts and powers
- add series/pos to summary
- cziread: better assign lightsources to channels
 2023-07-05 12:34:43 +02:00
Wim Pomp
8a74698fa5 - seqread bugfix where dimensions were mixed up 
- seqread load metadata in parallel in
 2023-07-04 16:24:17 +02:00
Wim Pomp
f40f7e501b - readme changes 2023-06-29 14:34:54 +02:00
Wim Pomp
506b449f4d - read metadata into ome structure 
- pytest
- use pathlib
- series as part of the path: path/PosN
- summary only shows some available metadata
- allow dict in Imread[dict(c=c, z=z, t=t)]
- bfread in different process so the user can start another jvm
- deal with multiple images (series/positions) in czi files
- use jpype instead of javabridge/bioformats
- poetry for install
 2023-06-29 14:23:03 +02:00