- implement shape in Rust

- implement more readers
- fix downloading of bioformats jar
- (mostly) compatible with python version

pyproject.toml

@@ -1,55 +1,43 @@
 [build-system]
-requires = ["maturin>=1.8,<2.0"]
+requires = ["maturin>=1.9.4,<2.0"]
 build-backend = "maturin"
 
 [project]
 name = "ndbioimage"
-description = "Bio image reading, metadata and some affine registration."
-authors = [
-    { name = "W. Pomp", email = "w.pomp@nki.nl" }
-]
-license = "MIT"
-readme = "README.md"
-keywords = ["bioformats", "imread", "numpy", "metadata"]
+version = "2027.0.0"
 requires-python = ">=3.10"
 classifiers = [
     "License :: OSI Approved :: MIT License",
     "Programming Language :: Rust",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3 :: Only",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
-    "Programming Language :: Python :: 3.12",
-    "Programming Language :: Python :: 3.13",
-    "Programming Language :: Python :: 3.14",
 ]
-dynamic = ["version"]
+dynamic = [
+    "description",
+    "readme",
+    "license",
+    "license-files",
+    "authors",
+    "maintainers",
+    "keywords",
+    "urls",
+]
 dependencies = [
-    "numpy",
-    "tiffwrite",
-    "ome-metadata >= 0.2.1",
-    "tqdm",
+    "numpy >= 1.16.0",
 ]
 
 [project.optional-dependencies]
 test = ["pytest"]
-write = ["matplotlib", "scikit-video"]
-
-[project.urls]
-Repository = "https://github.com/wimpomp/ndbioimage/tree/rs"
 
 [project.scripts]
-ndbioimage = "ndbioimage:main"
-
-[tool.pytest.ini_options]
-filterwarnings = ["ignore:::(colorcet)"]
+ndbioimage = "ndbioimage:ndbioimage_rs.main"
+ndbioimage_generate_stub = "ndbioimage:ndbioimage_generate_stub"
 
 [tool.maturin]
 python-source = "py"
-features = ["pyo3/extension-module", "python", "gpl-formats"]
+features = ["python", "bioformats_java", "tiffwrite", "czi"]
 module-name = "ndbioimage.ndbioimage_rs"
-exclude = ["py/ndbioimage/jassets/*", "py/ndbioimage/deps/*"]
+include = ["py/ndbioimage/jassets/j4rs*", "py/ndbioimage/deps/libj4rs*"]
 strip = true
 
 [tool.isort]