- implement shape in Rust

- implement more readers
- fix downloading of bioformats jar
- (mostly) compatible with python version

.github/workflows/publish_crates.yml

@@ -0,0 +1,66 @@
+name: Publish
+
+on: [workflow_dispatch]
+
+permissions:
+  contents: read
+
+jobs:
+  crates_io_publish:
+    name: Publish (crates.io)
+    runs-on: ubuntu-latest
+    timeout-minutes: 25
+    steps:
+      - uses: actions/checkout@v6
+      - name: Restore cache
+        uses: actions/cache/restore@v4
+        with:
+          path: |
+            ~/.cargo
+          key: cache-ubuntu-cargo-publish
+
+      - name: Install Rust
+        run: |-
+          export PATH="$HOME/.cargo/bin:$PATH"
+          if ! command -v rustc >/dev/null 2>&1; then
+            curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
+          else
+            rustup update
+          fi
+          cargo install cargo-release
+        shell: bash
+
+      # allow-branch HEAD is because GitHub actions switches
+      # to the tag while building, which is a detached head
+
+      # Publishing is currently messy, because:
+      #
+      # * `peace_rt_model_core` exports `NativeError` or `WebError` depending on the target.
+      # * `peace_rt_model_web` fails to build when publishing the workspace for a native target.
+      # * `peace_rt_model_web` still needs its dependencies to be published before it can be
+      #    published.
+      # * `peace_rt_model_hack` needs `peace_rt_model_web` to be published before it can be
+      #    published.
+      #
+      # We *could* pass through `--no-verify` so `cargo` doesn't build the crate before publishing,
+      # which is reasonable, since this job only runs after the Linux, Windows, and WASM builds
+      # have passed.
+      - name: "cargo release publish"
+        run: |-
+          export PATH="$HOME/.osxcross/bin:$PATH"
+          cargo login ${{ secrets.CRATES_IO_API_TOKEN }}
+          cargo release \
+            publish \
+            --workspace \
+            --all-features \
+            --allow-branch "main" \
+            --no-confirm \
+            --no-verify \
+            --execute
+
+      - name: Store cache
+        uses: actions/cache/save@v4
+        with:
+          path: |
+            ~/.cargo
+          key: cache-ubuntu-cargo-publish

.github/workflows/publish_pypi.yml

@@ -0,0 +1,114 @@
+name: CI
+
+on: [workflow_dispatch]
+
+permissions:
+  contents: read
+
+jobs:
+  pypi_publish:
+    name: Publish (pypi.org)
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.x
+
+      - name: Restore cache
+        uses: actions/cache/restore@v4
+        with:
+          path: |
+            ~/.cache/pip
+            ~/.cache/pip-wheel
+            ~/.cache/sccache
+            ~/.cache/cargo-xwin
+            ~/.cargo
+            ~/.osxcross
+          key: cache-ubuntu-maturin-cross-compile
+
+      - name: Install llvm
+        run: |
+          if ! command -v llvm-dlltool >/dev/null 2>&1; then
+            sudo apt update
+            sudo apt install -y llvm
+          fi
+        shell: bash
+
+      - name: Install Rust
+        run: |
+          export PATH="$HOME/.cargo/bin:$PATH"
+          if ! command -v rustc >/dev/null 2>&1; then
+            curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
+          else
+            rustup update
+          fi
+        shell: bash
+
+      - name: Install sccache and maturin
+        run: |
+          export PATH="$HOME/.cargo/bin:$PATH"
+          python -m pip install --upgrade pip
+          pip install maturin ziglang
+          if ! command -v sccache >/dev/null 2>&1; then
+            cargo install sccache || pip install sccache
+          fi
+        shell: bash
+
+      - name: Install xwin
+        run: |
+          export PATH="$HOME/.cargo/bin:$PATH"
+          if ! command -v cargo-xwin >/dev/null 2>&1; then
+            cargo install cargo-xwin || pip install cargo-xwin
+            cargo xwin cache xwin
+          fi
+        shell: bash
+
+      - name: Install osxcross
+        run: |
+          export PATH="$HOME/.osxcross/bin:$PATH"
+          if ! command -v osxcross >/dev/null 2>&1; then
+            wget ${{ secrets.OSXCROSS_LINK }} -O osxcross.tar.gz
+            tar -xzf osxcross.tar.gz -C ~/
+            mv ~/osxcross ~/.osxcross
+          fi
+
+      - name: Build wheels
+        run: |
+          export PATH="$HOME/.cargo/bin:$HOME/.osxcross/bin:$PATH"
+          maturin sdist --out dist
+          rustup default nightly
+          
+          rustup target add x86_64-unknown-linux-gnu --toolchain nightly
+          maturin build --release --out dist --target x86_64-unknown-linux-gnu
+          rustup target add aarch64-unknown-linux-gnu --toolchain nightly
+          maturin build --release --out dist --target aarch64-unknown-linux-gnu --zig
+          
+          rustup target add x86_64-pc-windows-msvc --toolchain nightly
+          maturin build --release --out dist --target x86_64-pc-windows-msvc
+          rustup target add aarch64-pc-windows-msvc --toolchain nightly
+          maturin build --release --out dist --target aarch64-pc-windows-msvc
+          
+          rustup target add x86_64-apple-darwin --toolchain nightly
+          maturin build --release --out dist --target x86_64-apple-darwin --zig
+          rustup target add aarch64-apple-darwin --toolchain nightly
+          maturin build --release --out dist --target aarch64-apple-darwin --zig
+
+      - name: Store cache
+        uses: actions/cache/save@v4
+        with:
+          path: |
+            ~/.cache/pip
+            ~/.cache/pip-wheel
+            ~/.cache/sccache
+            ~/.cache/cargo-xwin
+            ~/.cargo
+            ~/.osxcross
+          key: cache-ubuntu-maturin-cross-compile
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}
+        env:
+          GITHUB_WORKFLOW_REF: 1.10.1