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- some ome fixes

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This commit is contained in:
Wim Pomp
2023-08-21 11:14:32 +02:00
parent cf7f2b6e1e
commit ef6116c6bc
4 changed files with 9 additions and 8 deletions
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8
ndbioimage/readers/cziread.py
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@@ -101,7 +101,7 @@ class Reader(AbstractReader, ABC):
for light_source in instrument.find("LightSources"):
if light_source.find("LightSourceType").find("Laser") is not None:
ome.instruments[0].light_source_group.append(
ome.instruments[0].lasers.append(
model.Laser(
id=f'LightSource:{light_source.attrib["Id"]}',
power=float(text(light_source.find("Power"))),
@@ -214,7 +214,7 @@ class Reader(AbstractReader, ABC):
x=float(text(geometry.find("Left"))),
y=float(text(geometry.find("Top")))))
ome.rois.append(roi)
ome.images[0].roi_ref.append(model.ROIRef(id=f"ROI:{idx}"))
ome.images[0].roi_refs.append(model.ROIRef(id=f"ROI:{idx}"))
idx += 1
return ome
@@ -262,7 +262,7 @@ class Reader(AbstractReader, ABC):
for light_source in instrument.find("LightSources"):
if light_source.find("LightSourceType").find("Laser") is not None:
ome.instruments[0].light_source_group.append(
ome.instruments[0].lasers.append(
model.Laser(
id=light_source.attrib["Id"],
model=text(light_source.find("Manufacturer").find("Model")),
@@ -409,7 +409,7 @@ class Reader(AbstractReader, ABC):
x=float(text(geometry.find("Left"))),
y=float(text(geometry.find("Top")))))
ome.rois.append(roi)
ome.images[0].roi_ref.append(model.ROIRef(id=f"ROI:{idx}"))
ome.images[0].roi_refs.append(model.ROIRef(id=f"ROI:{idx}"))
idx += 1
return ome