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- add support for tiled czi's: bugfix

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w.pomp
2026-03-26 16:52:18 +01:00
parent bba24f2156
commit e56ef334f4
2 changed files with 6 additions and 4 deletions
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8
ndbioimage/readers/cziread.py
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@@ -190,9 +190,11 @@ class Reader(AbstractReader, ABC):
y = np.unique(y) y = np.unique(y)
_, bx = np.histogram(x, self.tiles[0]) _, bx = np.histogram(x, self.tiles[0])
_, by = np.histogram(y, self.tiles[1]) _, by = np.histogram(y, self.tiles[1])
by, bx = list(product([(i, j) for i, j in zip(by, by[1:])], [(i, j) for i, j in zip(bx, bx[1:])]))[ b = list(product([(i, j) for i, j in zip(by, by[1:])], [(i, j) for i, j in zip(bx, bx[1:])]))
self.series if self.series < len(b):
] by, bx = b[self.series]
else:
raise FileNotFoundError(self.path / f"Pos{self.series}")
for directory_entry in self.reader.filtered_subblock_directory: for directory_entry in self.reader.filtered_subblock_directory:
idx = self.get_index(directory_entry, self.reader.start) idx = self.get_index(directory_entry, self.reader.start)
if bx[0] <= idx[xi][0] <= bx[1] and by[0] <= idx[yi][0] <= by[1]: if bx[0] <= idx[xi][0] <= bx[1] and by[0] <= idx[yi][0] <= by[1]:

2
pyproject.toml
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@@ -1,6 +1,6 @@
[project] [project]
name = "ndbioimage" name = "ndbioimage"
version = "2026.3.3" version = "2026.3.4"
description = "Bio image reading, metadata and some affine registration." description = "Bio image reading, metadata and some affine registration."
authors = [ authors = [
{ name = "W. Pomp", email = "w.pomp@nki.nl" } { name = "W. Pomp", email = "w.pomp@nki.nl" }