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- Make layers optional in czi metadata.

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Wim Pomp
2024-03-08 17:29:48 +01:00
parent 8a66c570a6
commit b5c308365d
2 changed files with 2 additions and 2 deletions
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2
ndbioimage/readers/cziread.py
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@@ -354,7 +354,7 @@ class Reader(AbstractReader, ABC):
model.Plane(the_c=c, the_z=z, the_t=t, delta_t=delta_ts[t], exposure_time=exposure_times[c])) model.Plane(the_c=c, the_z=z, the_t=t, delta_t=delta_ts[t], exposure_time=exposure_times[c]))
idx = 0 idx = 0
for layer in metadata.find("Layers") or []: for layer in [] if (ml := metadata.find("Layers")) is None else ml:
rectangle = layer.find("Elements").find("Rectangle") rectangle = layer.find("Elements").find("Rectangle")
if rectangle is not None: if rectangle is not None:
geometry = rectangle.find("Geometry") geometry = rectangle.find("Geometry")

2
pyproject.toml
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@@ -1,6 +1,6 @@
[tool.poetry] [tool.poetry]
name = "ndbioimage" name = "ndbioimage"
version = "2024.2.0" version = "2024.3.0"
description = "Bio image reading, metadata and some affine registration." description = "Bio image reading, metadata and some affine registration."
authors = ["W. Pomp <w.pomp@nki.nl>"] authors = ["W. Pomp <w.pomp@nki.nl>"]
license = "GPLv3" license = "GPLv3"