- open tiff seq folders with bioformats_java by finding the first tiff recursively

- make PyView serializable by skipping the ome field
- fix python tests

tests/test_open.py

@@ -10,7 +10,9 @@ from ndbioimage import Imread
     "file",
     [
         file
-        for file in (Path(__file__).parent / "files").iterdir()
+        for path in (Path(__file__).parent / "files").iterdir()
+        if path.is_dir() and path.name != "czi_xml"
+        for file in path.iterdir()
         if not file.suffix == ".pzl"
     ],
 )

tests/test_slicing.py

@@ -18,7 +18,7 @@ def array():
 @pytest.fixture()
 def image(array):
     with tempfile.TemporaryDirectory() as folder:
-        file = Path(folder) / "test.tif"
+        file = Path(folder) / "tiff" / "test.tif"
         tiffwrite(file, array, "yxczt")
         with Imread(file, axes="yxczt") as im:
             yield im

tests/test_ufuncs.py

@@ -17,7 +17,7 @@ def array():
 @pytest.fixture()
 def image(array):
     with tempfile.TemporaryDirectory() as folder:
-        file = Path(folder) / "test.tif"
+        file = Path(folder) / "tiff" / "test.tif"
         tiffwrite(file, array, "yxczt")
         with Imread(file, axes="yxczt") as im:
             yield im