- remove all readers but bioformats

- open folder with sequence
This commit is contained in:
Wim Pomp
2025-02-19 21:28:59 +01:00
parent 2247a994be
commit 87e9715f97
15 changed files with 266 additions and 1407 deletions

View File

@@ -1,20 +1,32 @@
import tempfile
from itertools import combinations_with_replacement
from numbers import Number
from pathlib import Path
import numpy as np
import pytest
from tiffwrite import tiffwrite
from ndbioimage import Imread
r = np.random.randint(0, 255, (64, 64, 2, 3, 4))
im = Imread(r)
a = np.array(im)
@pytest.fixture
def array():
return np.random.randint(0, 255, (64, 64, 2, 3, 4), 'uint8')
@pytest.fixture()
def image(array):
with tempfile.TemporaryDirectory() as folder:
file = Path(folder) / "test.tif"
tiffwrite(file, array, 'yxczt')
with Imread(file, axes='yxczt') as im:
yield im
@pytest.mark.parametrize('s', combinations_with_replacement(
(0, -1, 1, slice(None), slice(0, 1), slice(-1, 0), slice(1, 1)), 5))
def test_slicing(s):
s_im, s_a = im[s], a[s]
def test_slicing(s, image, array):
s_im, s_a = image[s], array[s]
if isinstance(s_a, Number):
assert isinstance(s_im, Number)
assert s_im == s_a