- First commit

setup.py

@@ -0,0 +1,48 @@
+import setuptools
+import platform
+import os
+
+version = '2022.7.0'
+
+if platform.system().lower() == 'linux':
+    import pkg_resources
+    pkg_resources.require(['pip >= 20.3'])
+
+with open('README.md', 'r') as fh:
+    long_description = fh.read()
+
+
+with open(os.path.join(os.path.dirname(__file__), 'ndbioimage', '_version.py'), 'w') as f:
+    f.write(f"__version__ = '{version}'\n")
+    try:
+        with open(os.path.join(os.path.dirname(__file__), '.git', 'refs', 'heads', 'master')) as h:
+            f.write("__git_commit_hash__ = '{}'\n".format(h.read().rstrip('\n')))
+    except Exception:
+        f.write(f"__git_commit_hash__ = 'unknown'\n")
+
+
+setuptools.setup(
+    name='ndbioimage',
+    version=version,
+    author='Wim Pomp',
+    author_email='w.pomp@nki.nl',
+    description='Bio image reading, metadata and some affine registration.',
+    long_description=long_description,
+    long_description_content_type='text/markdown',
+    url='https://github.com/wimpomp/ndbioimage',
+    packages=['ndbioimage', 'ndbioimage.readers'],
+    classifiers=[
+        'Programming Language :: Python :: 3',
+        'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+        'Operating System :: OS Independent',
+    ],
+    python_requires='>=3.7',
+    install_requires=['untangle', 'pandas', 'psutil', 'numpy', 'tqdm', 'tifffile', 'czifile', 'pyyaml', 'dill',
+                      'tiffwrite'],
+    extras_require={'transforms': 'SimpleITK-SimpleElastix',
+                    'bioformats': ['python-javabridge', 'python-bioformats']},
+    tests_require=['pytest-xdist'],
+    entry_points={'console_scripts': ['ndbioimage=ndbioimage.ndbioimage:main']},
+    package_data={'': ['transform.txt']},
+    include_package_data=True,
+)