- implement custom error types
- less restrictive dependency versions - some extra features and bugfixes for movie writing - make python tests work again
This commit is contained in:
57
Cargo.toml
57
Cargo.toml
@@ -1,6 +1,6 @@
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[package]
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name = "ndbioimage"
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version = "2025.8.0"
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version = "2026.1.0"
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edition = "2024"
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rust-version = "1.85.1"
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authors = ["Wim Pomp <w.pomp@nki.nl>"]
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@@ -8,6 +8,7 @@ license = "MIT"
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description = "Read bio image formats using the bio-formats java package."
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homepage = "https://github.com/wimpomp/ndbioimage/tree/rs"
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repository = "https://github.com/wimpomp/ndbioimage/tree/rs"
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documentation = "https://docs.rs/ndbioimage"
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readme = "README.md"
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keywords = ["bioformats", "imread", "ndarray", "metadata"]
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categories = ["multimedia::images", "science"]
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@@ -19,39 +20,38 @@ name = "ndbioimage"
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crate-type = ["cdylib", "rlib"]
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[dependencies]
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anyhow = { version = "1.0.99", features = ["backtrace"] }
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clap = { version = "4.5.45", features = ["derive"] }
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ffmpeg-sidecar = { version = "2.1.0", optional = true }
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itertools = "0.14.0"
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indexmap = { version = "2.0.0", features = ["serde"] }
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indicatif = { version = "0.18.0", features = ["rayon"], optional = true }
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j4rs = "0.22.0"
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ndarray = { version = "0.16.1", features = ["serde"] }
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num = "0.4.3"
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numpy = { version = "0.25.0", optional = true }
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ordered-float = "5.0.0"
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rayon = { version = "1.11.0", optional = true }
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serde = { version = "1.0.219", features = ["rc"] }
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serde_json = { version = "1.0.143", optional = true }
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serde_with = "3.12.0"
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tiffwrite = { version = "2025.5.0", optional = true}
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thread_local = "1.1.9"
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ome-metadata = "0.2.2"
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lazy_static = "1.5.0"
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clap = { version = "4", features = ["derive"] }
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ffmpeg-sidecar = { version = "2", optional = true }
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itertools = "0.14"
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indexmap = { version = "2", features = ["serde"] }
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indicatif = { version = "0.18", features = ["rayon"], optional = true }
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j4rs = "0.24"
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ndarray = { version = "0.17", features = ["serde"] }
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num = "0.4"
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numpy = { version = "0.27", optional = true }
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ordered-float = "5"
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rayon = { version = "1", optional = true }
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serde = { version = "1", features = ["rc"] }
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serde_json = { version = "1", optional = true }
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serde_with = "3"
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tiffwrite = { version = "2025.12.0", optional = true}
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thread_local = "1"
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ome-metadata = "0.3"
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lazy_static = "1"
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thiserror = "2"
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[dependencies.pyo3]
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version = "0.25.1"
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version = "0.27"
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features = ["extension-module", "abi3-py310", "generate-import-lib", "anyhow"]
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optional = true
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[dev-dependencies]
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rayon = "1.10.0"
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rayon = "1"
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[build-dependencies]
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anyhow = "1.0.99"
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j4rs = "0.22.0"
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ffmpeg-sidecar = "2.1.0"
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retry = "2.1.0"
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j4rs = "0.24"
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ffmpeg-sidecar = "2"
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retry = "2"
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[features]
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# Enables formats for which code in bioformats with a GPL license is needed
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@@ -61,4 +61,7 @@ python = ["dep:pyo3", "dep:numpy", "dep:serde_json"]
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# Enables writing as tiff
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tiff = ["dep:tiffwrite", "dep:indicatif", "dep:rayon"]
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# Enables writing as mp4 using ffmpeg
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movie = ["dep:ffmpeg-sidecar"]
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movie = ["dep:ffmpeg-sidecar"]
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[package.metadata.docs.rs]
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features = ["gpl-formats", "tiff", "movie"]
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