- CachedPath bugfix, try 3

This commit is contained in:
Wim Pomp
2024-04-03 14:56:06 +02:00
parent 153355d736
commit 37364d9cfa
2 changed files with 12 additions and 27 deletions

View File

@@ -133,26 +133,6 @@ class Shape(tuple):
return tuple(self[i] for i in 'yxczt') # type: ignore return tuple(self[i] for i in 'yxczt') # type: ignore
class CachedPath(WindowsPath if os.name == 'nt' else PosixPath):
""" helper class for checking whether a file has changed, used by OmeCache """
def __init__(self, path: Path | str) -> None:
super().__init__(path)
if self.exists():
self._lstat = super().lstat() # save file metadata like creation time etc.
else:
self._lstat = None
def __eq__(self, other: Path | CachedPath) -> bool:
return super().__eq__(other) and self.lstat() == other.lstat()
def __hash__(self) -> int:
return hash((super().__hash__(), self.lstat()))
def lstat(self):
return self._lstat
class OmeCache(DequeDict): class OmeCache(DequeDict):
""" prevent (potentially expensive) rereading of ome data by caching """ """ prevent (potentially expensive) rereading of ome data by caching """
@@ -169,14 +149,19 @@ class OmeCache(DequeDict):
def __reduce__(self) -> tuple[type, tuple]: def __reduce__(self) -> tuple[type, tuple]:
return self.__class__, () return self.__class__, ()
def __getitem__(self, item: Path | CachedPath) -> OME: def __getitem__(self, path: Path) -> OME:
return super().__getitem__(CachedPath(item)) return super().__getitem__(self.path_and_lstat(path))
def __setitem__(self, key: Path | CachedPath, value: OME) -> None: def __setitem__(self, path: Path, value: OME) -> None:
super().__setitem__(CachedPath(key), value) super().__setitem__(self.path_and_lstat(path), value)
def __contains__(self, item: Path | CachedPath) -> bool: def __contains__(self, path: Path) -> bool:
return super().__contains__(CachedPath(item)) return super().__contains__(self.path_and_lstat(path))
@staticmethod
def path_and_lstat(path: str | Path) -> tuple[Path, Optional[os.stat_result]]:
path = Path(path)
return path, (path.lstat() if path.exists() else None)
class Imread(np.lib.mixins.NDArrayOperatorsMixin, ABC): class Imread(np.lib.mixins.NDArrayOperatorsMixin, ABC):

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@@ -1,6 +1,6 @@
[tool.poetry] [tool.poetry]
name = "ndbioimage" name = "ndbioimage"
version = "2024.4.2" version = "2024.4.3"
description = "Bio image reading, metadata and some affine registration." description = "Bio image reading, metadata and some affine registration."
authors = ["W. Pomp <w.pomp@nki.nl>"] authors = ["W. Pomp <w.pomp@nki.nl>"]
license = "GPLv3" license = "GPLv3"